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<div class="btitl">Dock PDB target</div>
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<a target=_blank href="http://wiki.bkslab.org/index.php/DOCK_Blaster:Progress_Bar#Preparer">
<img border="0" src="/icons/nav1.png" title="Progress Bar: Click for documentation">
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<b>Welcome to the DOCK Blaster Parser, where you can start docking with just a PDB code*</b>
<br />To start you need a target (and sometimes a ligand).  To get a PDB code: &nbsp; &nbsp; &nbsp; (* restrictions apply)
<ul><li>To find a PDB code, you may <a target=_blank href="http://www.rcsb.org/pdb/search/structidSearch.do">search the PDB</a>.</li>
<li>For a demonstration that will work, try human thyroid receptor beta (PDB code 1N46).</li>
<li>You may pick from a list of 9870 eligible structures containing a ligand</li>
<li>Or if you want to take your chances, try clicking: "I'm Feeling Lucky" (below)</li></ul>
Some <a target=_blank href="http://wiki.bkslab.org/index.php/DOCK_Blaster:Dock_PDB_target">documentation</a> is available.
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<br />&nbsp;<br />
<td align="right"><a name="code_d" title="Enter PDB code">PDB Code</a> : </td>
<td><input type="text" name="code" size="5">
 (<a target=_blank href="bycode/pdb_with_ligand.txt">9870 eligible PDB structures with ligand</a>, 
<!--
 <a target=_blank href="bycode/pdb_lt2.5_xray_noNuc.txt">26,664 with &lt; 2.5 A, X-ray, no nucleic acid</a>,
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 PDB 2008-08)
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<a name="where" title="Ligand (optional).">Ligand : </a>
<td><input type="text" name="ligand" size="5"> (optional)</td>
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<a name="email" title="Email is optional. If left blank, you will not be informed of job progress by email">
Email </a> : </td>
<td><input type="text" name="email" size="40"> (optional)</td>
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<a name="aim" title="Aim: Being specific and detailed will help you later.">
The aim of this experiment is : </a></td>
<td><input type="text" name="memo" size="65"></td>
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<br />
By clicking "DOCK!" you agree to the <a title="blah blah blah blah" 
target=_blank 
href="http://wiki.bkslab.org/index.php/Terms_And_Conditions">
Terms and Conditions</A>. &nbsp; &nbsp; 
<a name="dock" title="Click to upload data and have it scrutinized"> 
<input type="SUBMIT" name="OK" value="DOCK!" onClick="form.submit();"></a> &nbsp;  &nbsp;  &nbsp;
<INPUT TYPE="SUBMIT" NAME="luck" VALUE="I'm Feeling Lucky" onClick="form.elements[0].value = 1; form.submit(); form.elements[0].value = 0"> 
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